J4_5JVH_005

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

AUG*UU*GGGAG*CGAAGU

Length

16 nucleotides

Bulged bases

5JVH|1|X|U|1459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JVH_005 not in the Motif Atlas

Homologous match to J4_7A0S_007

Geometric discrepancy: 0.1181

The information below is about J4_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_91813.1

Basepair signature

cWW-cWW-F-tSH-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

5JVH|1|X|A|1458
5JVH|1|X|U|1459
5JVH|1|X|G|1460
*
5JVH|1|X|U|1481
5JVH|1|X|U|1482
*
5JVH|1|X|G|1541
5JVH|1|X|G|1542
5JVH|1|X|G|1543
5JVH|1|X|A|1544
5JVH|1|X|G|1545
*
5JVH|1|X|C|1558
5JVH|1|X|G|1559
5JVH|1|X|A|1560
5JVH|1|X|A|1561
5JVH|1|X|G|1562
5JVH|1|X|U|1563

Current chains

Chain X

23S ribosomal RNA

Nearby chains