J4_5KCS_004

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5KCS|1|1A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KCS_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1072

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5KCS|1|1A|G|1310
5KCS|1|1A|G|1311
5KCS|1|1A|U|1312
5KCS|1|1A|U|1313
5KCS|1|1A|C|1314
*
5KCS|1|1A|G|1338
5KCS|1|1A|G|1339
5KCS|1|1A|U|1340
5KCS|1|1A|G|1341
5KCS|1|1A|A|1342
5KCS|1|1A|G|1343
*
5KCS|1|1A|C|1404
5KCS|1|1A|U|1405
*
5KCS|1|1A|A|1597
5KCS|1|1A|A|1598
5KCS|1|1A|U|1599
5KCS|1|1A|C|1600
5KCS|1|1A|G|1601
5KCS|1|1A|U|1602
5KCS|1|1A|A|1603
5KCS|1|1A|C|1604

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23