J4_5KCS_013
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUGU*ACC
- Length
- 25 nucleotides
- Bulged bases
- 5KCS|1|1a|C|576, 5KCS|1|1a|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5KCS|1|1a|G|575
5KCS|1|1a|C|576
5KCS|1|1a|G|577
*
5KCS|1|1a|C|764
5KCS|1|1a|G|765
5KCS|1|1a|A|766
5KCS|1|1a|A|767
5KCS|1|1a|A|768
5KCS|1|1a|G|769
*
5KCS|1|1a|C|810
5KCS|1|1a|C|811
5KCS|1|1a|G|812
5KCS|1|1a|U|813
5KCS|1|1a|A|814
5KCS|1|1a|A|815
5KCS|1|1a|A|816
5KCS|1|1a|C|817
5KCS|1|1a|G|818
5KCS|1|1a|A|819
5KCS|1|1a|U|820
5KCS|1|1a|G|821
5KCS|1|1a|U|822
*
5KCS|1|1a|A|878
5KCS|1|1a|C|879
5KCS|1|1a|C|880
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1h
- 30S ribosomal protein S8
- Chain 1k
- 30S ribosomal protein S11
- Chain 1l
- 30S ribosomal protein S12
- Chain 1o
- 30S ribosomal protein S15
- Chain 1q
- 30S ribosomal protein S17
- Chain 1u
- 30S ribosomal protein S21
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