J4_5KCS_014
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUGUAG*CGC*GAG(7MG)UCGGUG*CAC(PSU)CAGG
- Length
- 28 nucleotides
- Bulged bases
- 5KCS|1|1x|U|8, 5KCS|1|1x|U|47, 5KCS|1|1x|C|48
- QA status
- Modified nucleotides: 7MG, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5KCS|1|1x|C|4
5KCS|1|1x|U|5
5KCS|1|1x|U|6
5KCS|1|1x|G|7
5KCS|1|1x|U|8
5KCS|1|1x|A|9
5KCS|1|1x|G|10
*
5KCS|1|1x|C|25
5KCS|1|1x|G|26
5KCS|1|1x|C|27
*
5KCS|1|1x|G|43
5KCS|1|1x|A|44
5KCS|1|1x|G|45
5KCS|1|1x|7MG|46
5KCS|1|1x|U|47
5KCS|1|1x|C|48
5KCS|1|1x|G|49
5KCS|1|1x|G|50
5KCS|1|1x|U|51
5KCS|1|1x|G|52
*
5KCS|1|1x|C|62
5KCS|1|1x|A|63
5KCS|1|1x|C|64
5KCS|1|1x|PSU|65
5KCS|1|1x|C|66
5KCS|1|1x|A|67
5KCS|1|1x|G|68
5KCS|1|1x|G|69
Current chains
- Chain 1x
- P-site tRNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1m
- 30S ribosomal protein S13
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