J4_5KPV_016

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5KPV|1|27|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPV_016 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1193

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

5KPV|1|27|C|1833
5KPV|1|27|U|1834
5KPV|1|27|G|1835
*
5KPV|1|27|C|1905
5KPV|1|27|G|1906
*
5KPV|1|27|C|1924
5KPV|1|27|C|1925
5KPV|1|27|U|1926
5KPV|1|27|A|1927
5KPV|1|27|A|1928
5KPV|1|27|G|1929
5KPV|1|27|G|1930
5KPV|1|27|U|1931
5KPV|1|27|A|1932
5KPV|1|27|G|1933
*
5KPV|1|27|C|1967
5KPV|1|27|G|1968
5KPV|1|27|A|1969
5KPV|1|27|A|1970
5KPV|1|27|U|1971
5KPV|1|27|G|1972

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 26

Small subunit ribosomal RNA; SSU rRNA

Chain 31

Transfer RNA; tRNA

Chain A

50S ribosomal protein L2