J4_5KPW_005

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

5KPW|1|27|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPW_005 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1467

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

5KPW|1|27|C|601
5KPW|1|27|A|602
5KPW|1|27|A|603
5KPW|1|27|G|604
*
5KPW|1|27|C|624
5KPW|1|27|G|625
5KPW|1|27|A|626
5KPW|1|27|A|627
5KPW|1|27|G|628
*
5KPW|1|27|C|635
5KPW|1|27|G|636
5KPW|1|27|A|637
5KPW|1|27|G|638
*
5KPW|1|27|C|650
5KPW|1|27|G|651
5KPW|1|27|U|652
5KPW|1|27|U|653
5KPW|1|27|A|654
5KPW|1|27|A|655
5KPW|1|27|G|656

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L35

Chain C

50S ribosomal protein L4

Chain K

50S ribosomal protein L15