J4_5KPW_007

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5KPW|1|27|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPW_007 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0964

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5KPW|1|27|G|1310
5KPW|1|27|G|1311
5KPW|1|27|U|1312
5KPW|1|27|U|1313
5KPW|1|27|C|1314
*
5KPW|1|27|G|1338
5KPW|1|27|G|1339
5KPW|1|27|U|1340
5KPW|1|27|G|1341
5KPW|1|27|A|1342
5KPW|1|27|G|1343
*
5KPW|1|27|C|1404
5KPW|1|27|U|1405
*
5KPW|1|27|A|1597
5KPW|1|27|A|1598
5KPW|1|27|U|1599
5KPW|1|27|C|1600
5KPW|1|27|G|1601
5KPW|1|27|U|1602
5KPW|1|27|A|1603
5KPW|1|27|C|1604

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34

Chain S

50S ribosomal protein L23