J4_5KPX_005

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPX_005 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1786

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

5KPX|1|27|C|601
5KPX|1|27|A|602
5KPX|1|27|A|603
5KPX|1|27|G|604
*
5KPX|1|27|C|624
5KPX|1|27|G|625
5KPX|1|27|A|626
5KPX|1|27|A|627
5KPX|1|27|G|628
*
5KPX|1|27|C|635
5KPX|1|27|G|636
5KPX|1|27|A|637
5KPX|1|27|G|638
*
5KPX|1|27|C|650
5KPX|1|27|G|651
5KPX|1|27|U|652
5KPX|1|27|U|653
5KPX|1|27|A|654
5KPX|1|27|A|655
5KPX|1|27|G|656

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L35

Chain C

50S ribosomal protein L4

Chain K

50S ribosomal protein L15