J4_5L4O_001

3D structure

PDB id

5L4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an E.coli initiator tRNAfMet A1-U72 variant

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

G(4SU)GG*CGU*AAGAUCG*CC

Length

16 nucleotides

Bulged bases

5L4O|1|A|4SU|8, 5L4O|1|A|U|47, 5L4O|1|A|C|48

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.24

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

56

Unit IDs

5L4O|1|A|G|7
5L4O|1|A|4SU|8
5L4O|1|A|G|9
5L4O|1|A|G|10
*
5L4O|1|A|C|25
5L4O|1|A|G|26
5L4O|1|A|U|27
*
5L4O|1|A|A|43
5L4O|1|A|A|44
5L4O|1|A|G|45
5L4O|1|A|A|46
5L4O|1|A|U|47
5L4O|1|A|C|48
5L4O|1|A|G|49
*
5L4O|1|A|C|65
5L4O|1|A|C|66

Current chains

Chain A

tRNA (76-MER)

Nearby chains