J4_5LI0_007

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACUG*CACAGG*CUGACG*CGUAAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LI0|1|A|G|1799
5LI0|1|A|A|1800
5LI0|1|A|C|1801
5LI0|1|A|U|1802
5LI0|1|A|G|1803
*
5LI0|1|A|C|1815
5LI0|1|A|A|1816
5LI0|1|A|C|1817
5LI0|1|A|A|1818
5LI0|1|A|G|1819
5LI0|1|A|G|1820
*
5LI0|1|A|C|1853
5LI0|1|A|U|1854
5LI0|1|A|G|1855
5LI0|1|A|A|1856
5LI0|1|A|C|1857
5LI0|1|A|G|1858
*
5LI0|1|A|C|2001
5LI0|1|A|G|2002
5LI0|1|A|U|2003
5LI0|1|A|A|2004
5LI0|1|A|A|2005
5LI0|1|A|C|2006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA