J4_5LI0_008

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

5LI0|1|A|A|1998

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LI0_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1529

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5LI0|1|A|C|1860
5LI0|1|A|U|1861
5LI0|1|A|G|1862
*
5LI0|1|A|C|1932
5LI0|1|A|G|1933
*
5LI0|1|A|C|1951
5LI0|1|A|C|1952
5LI0|1|A|U|1953
5LI0|1|A|A|1954
5LI0|1|A|A|1955
5LI0|1|A|G|1956
5LI0|1|A|G|1957
5LI0|1|A|U|1958
5LI0|1|A|A|1959
5LI0|1|A|G|1960
*
5LI0|1|A|C|1994
5LI0|1|A|G|1995
5LI0|1|A|A|1996
5LI0|1|A|A|1997
5LI0|1|A|A|1998
5LI0|1|A|G|1999

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA