J4_5LI0_011

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGUAACAC*GCU*AUAG*CC

Length

18 nucleotides

Bulged bases

5LI0|1|a|C|120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LI0|1|a|G|114
5LI0|1|a|A|115
5LI0|1|a|G|116
5LI0|1|a|U|117
5LI0|1|a|A|118
5LI0|1|a|A|119
5LI0|1|a|C|120
5LI0|1|a|A|121
5LI0|1|a|C|122
*
5LI0|1|a|G|246
5LI0|1|a|C|247
5LI0|1|a|U|248
*
5LI0|1|a|A|294
5LI0|1|a|U|295
5LI0|1|a|A|296
5LI0|1|a|G|297
*
5LI0|1|a|C|319
5LI0|1|a|C|320

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17