J4_5LI0_012

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAC*GAUAAUAU*AGUGAAAG*CAC

Length

22 nucleotides

Bulged bases

5LI0|1|a|A|182, 5LI0|1|a|U|183, 5LI0|1|a|A|211, 5LI0|1|a|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LI0|1|a|G|142
5LI0|1|a|A|143
5LI0|1|a|C|144
*
5LI0|1|a|G|178
5LI0|1|a|A|179
5LI0|1|a|U|180
5LI0|1|a|A|181
5LI0|1|a|A|182
5LI0|1|a|U|183
5LI0|1|a|A|184
5LI0|1|a|U|185
*
5LI0|1|a|A|206
5LI0|1|a|G|207
5LI0|1|a|U|208
5LI0|1|a|G|209
5LI0|1|a|A|210
5LI0|1|a|A|211
5LI0|1|a|A|212
5LI0|1|a|G|213
*
5LI0|1|a|C|227
5LI0|1|a|A|228
5LI0|1|a|C|229

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20