J4_5LMO_003
3D structure
- PDB id
- 5LMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGUAAAGGG*CGAAAG*CCCUAAACGAUG*CCG
- Length
- 30 nucleotides
- Bulged bases
- 5LMO|1|A|A|572, 5LMO|1|A|G|576, 5LMO|1|A|A|815, 5LMO|1|A|C|817, 5LMO|1|A|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LMO|1|A|C|569
5LMO|1|A|G|570
5LMO|1|A|U|571
5LMO|1|A|A|572
5LMO|1|A|A|573
5LMO|1|A|A|574
5LMO|1|A|G|575
5LMO|1|A|G|576
5LMO|1|A|G|577
*
5LMO|1|A|C|764
5LMO|1|A|G|765
5LMO|1|A|A|766
5LMO|1|A|A|767
5LMO|1|A|A|768
5LMO|1|A|G|769
*
5LMO|1|A|C|810
5LMO|1|A|C|811
5LMO|1|A|C|812
5LMO|1|A|U|813
5LMO|1|A|A|814
5LMO|1|A|A|815
5LMO|1|A|A|816
5LMO|1|A|C|817
5LMO|1|A|G|818
5LMO|1|A|A|819
5LMO|1|A|U|820
5LMO|1|A|G|821
*
5LMO|1|A|C|879
5LMO|1|A|C|880
5LMO|1|A|G|881
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S5
- Chain H
- 30S ribosomal protein S8
- Chain K
- 30S ribosomal protein S11
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
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