3D structure

PDB id
5LMU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CGUAAAGGG*CGAAAG*CCCUAAACGAUG*CCG
Length
30 nucleotides
Bulged bases
5LMU|1|A|A|572, 5LMU|1|A|G|576, 5LMU|1|A|A|815, 5LMU|1|A|C|817, 5LMU|1|A|A|819
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5LMU|1|A|C|569
5LMU|1|A|G|570
5LMU|1|A|U|571
5LMU|1|A|A|572
5LMU|1|A|A|573
5LMU|1|A|A|574
5LMU|1|A|G|575
5LMU|1|A|G|576
5LMU|1|A|G|577
*
5LMU|1|A|C|764
5LMU|1|A|G|765
5LMU|1|A|A|766
5LMU|1|A|A|767
5LMU|1|A|A|768
5LMU|1|A|G|769
*
5LMU|1|A|C|810
5LMU|1|A|C|811
5LMU|1|A|C|812
5LMU|1|A|U|813
5LMU|1|A|A|814
5LMU|1|A|A|815
5LMU|1|A|A|816
5LMU|1|A|C|817
5LMU|1|A|G|818
5LMU|1|A|A|819
5LMU|1|A|U|820
5LMU|1|A|G|821
*
5LMU|1|A|C|879
5LMU|1|A|C|880
5LMU|1|A|G|881

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain E
30S ribosomal protein S5
Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17

Coloring options:

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