J4_5LYB_020

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUAAG*UUG*CC*GUG

Length

13 nucleotides

Bulged bases

5LYB|1|5|A|2657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LYB|1|5|C|2654
5LYB|1|5|U|2655
5LYB|1|5|A|2656
5LYB|1|5|A|2657
5LYB|1|5|G|2658
*
5LYB|1|5|U|2712
5LYB|1|5|U|2713
5LYB|1|5|G|2714
*
5LYB|1|5|C|2741
5LYB|1|5|C|2742
*
5LYB|1|5|G|2751
5LYB|1|5|U|2752
5LYB|1|5|G|2753

Current chains

Chain 5

25S rRNA

Nearby chains

Chain l5

60S ribosomal protein L5

Chain n1

60S ribosomal protein L21-A

Chain q2

60S ribosomal protein L42-A