J4_5LZA_004

3D structure

PDB id

5LZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5LZA|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZA_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1012

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5LZA|1|A|G|1310
5LZA|1|A|G|1311
5LZA|1|A|U|1312
5LZA|1|A|U|1313
5LZA|1|A|C|1314
*
5LZA|1|A|G|1338
5LZA|1|A|G|1339
5LZA|1|A|U|1340
5LZA|1|A|G|1341
5LZA|1|A|A|1342
5LZA|1|A|G|1343
*
5LZA|1|A|C|1404
5LZA|1|A|U|1405
*
5LZA|1|A|A|1597
5LZA|1|A|A|1598
5LZA|1|A|U|1599
5LZA|1|A|C|1600
5LZA|1|A|G|1601
5LZA|1|A|U|1602
5LZA|1|A|A|1603
5LZA|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23