J4_5LZC_004

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5LZC|1|A|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZC_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1232

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5LZC|1|A|G|1310
5LZC|1|A|G|1311
5LZC|1|A|U|1312
5LZC|1|A|U|1313
5LZC|1|A|C|1314
*
5LZC|1|A|G|1338
5LZC|1|A|G|1339
5LZC|1|A|U|1340
5LZC|1|A|G|1341
5LZC|1|A|A|1342
5LZC|1|A|G|1343
*
5LZC|1|A|C|1404
5LZC|1|A|U|1405
*
5LZC|1|A|A|1597
5LZC|1|A|A|1598
5LZC|1|A|U|1599
5LZC|1|A|C|1600
5LZC|1|A|G|1601
5LZC|1|A|U|1602
5LZC|1|A|A|1603
5LZC|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23