J4_5LZS_002
3D structure
- PDB id
- 5LZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- AUAG*CAU*AGGGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 5LZS|1|3|U|8, 5LZS|1|3|U|47, 5LZS|1|3|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5LZS_002 not in the Motif Atlas
- Homologous match to J4_5AXM_001
- Geometric discrepancy: 0.1767
- The information below is about J4_5AXM_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
5LZS|1|3|A|7
5LZS|1|3|U|8
5LZS|1|3|A|9
5LZS|1|3|G|10
*
5LZS|1|3|C|25
5LZS|1|3|A|26
5LZS|1|3|U|27
*
5LZS|1|3|A|43
5LZS|1|3|G|44
5LZS|1|3|G|45
5LZS|1|3|G|46
5LZS|1|3|U|47
5LZS|1|3|C|48
5LZS|1|3|C|49
*
5LZS|1|3|G|65
5LZS|1|3|U|66
Current chains
- Chain 3
- E-site tRNA
Nearby chains
- Chain FF
- Uncharacterized protein
- Chain o
- eL42
Coloring options: