J4_5LZS_004

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

5LZS|1|5|C|216, 5LZS|1|5|C|217, 5LZS|1|5|A|218, 5LZS|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZS|1|5|C|196
5LZS|1|5|A|197
5LZS|1|5|A|198
5LZS|1|5|G|199
*
5LZS|1|5|C|215
5LZS|1|5|C|216
5LZS|1|5|C|217
5LZS|1|5|A|218
5LZS|1|5|G|219
5LZS|1|5|C|220
5LZS|1|5|C|221
5LZS|1|5|C|222
*
5LZS|1|5|G|226
5LZS|1|5|A|227
5LZS|1|5|C|228
*
5LZS|1|5|G|240
5LZS|1|5|G|241
5LZS|1|5|U|242
5LZS|1|5|A|243
5LZS|1|5|G|244

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain Y

uL24