J4_5LZU_001
3D structure
- PDB id
- 5LZU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian ribosomal termination complex with accommodated eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GUAG*CGU*AAGGUCC*GC
- Length
- 16 nucleotides
- Bulged bases
- 5LZU|1|2|U|8, 5LZU|1|2|U|47, 5LZU|1|2|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5LZU_001 not in the Motif Atlas
- Homologous match to J4_4WJ4_001
- Geometric discrepancy: 0.1805
- The information below is about J4_4WJ4_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5LZU|1|2|G|7
5LZU|1|2|U|8
5LZU|1|2|A|9
5LZU|1|2|G|10
*
5LZU|1|2|C|25
5LZU|1|2|G|26
5LZU|1|2|U|27
*
5LZU|1|2|A|43
5LZU|1|2|A|44
5LZU|1|2|G|45
5LZU|1|2|G|46
5LZU|1|2|U|47
5LZU|1|2|C|48
5LZU|1|2|C|49
*
5LZU|1|2|G|65
5LZU|1|2|C|66
Current chains
- Chain 2
- P-site tRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- uL16
- Chain ii
- Eukaryotic peptide chain release factor subunit 1
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