J4_5LZU_002

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AUAG*CAU*AGGGUCC*GU

Length

16 nucleotides

Bulged bases

5LZU|1|3|U|8, 5LZU|1|3|U|47, 5LZU|1|3|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZU_002 not in the Motif Atlas

Homologous match to J4_5AXM_001

Geometric discrepancy: 0.1808

The information below is about J4_5AXM_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5LZU|1|3|A|7
5LZU|1|3|U|8
5LZU|1|3|A|9
5LZU|1|3|G|10
*
5LZU|1|3|C|25
5LZU|1|3|A|26
5LZU|1|3|U|27
*
5LZU|1|3|A|43
5LZU|1|3|G|44
5LZU|1|3|G|45
5LZU|1|3|G|46
5LZU|1|3|U|47
5LZU|1|3|C|48
5LZU|1|3|C|49
*
5LZU|1|3|G|65
5LZU|1|3|U|66

Current chains

Chain 3

E-site tRNA

Nearby chains

Chain FF

uS7

Chain o

eL42