J4_5LZU_004

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

5LZU|1|5|C|216, 5LZU|1|5|C|217, 5LZU|1|5|A|218, 5LZU|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZU|1|5|C|196
5LZU|1|5|A|197
5LZU|1|5|A|198
5LZU|1|5|G|199
*
5LZU|1|5|C|215
5LZU|1|5|C|216
5LZU|1|5|C|217
5LZU|1|5|A|218
5LZU|1|5|G|219
5LZU|1|5|C|220
5LZU|1|5|C|221
5LZU|1|5|C|222
*
5LZU|1|5|G|226
5LZU|1|5|A|227
5LZU|1|5|C|228
*
5LZU|1|5|G|240
5LZU|1|5|G|241
5LZU|1|5|U|242
5LZU|1|5|A|243
5LZU|1|5|G|244

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain Y

uL24