3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
CUG*CG*CUUAAGGUAG*UGAAUG
Length
21 nucleotides
Bulged bases
5LZU|1|5|U|3818
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5LZU_010 not in the Motif Atlas
Homologous match to J4_8C3A_007
Geometric discrepancy: 0.1169
The information below is about J4_8C3A_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5LZU|1|5|C|3696
5LZU|1|5|U|3697
5LZU|1|5|G|3698
*
5LZU|1|5|C|3752
5LZU|1|5|G|3753
*
5LZU|1|5|C|3771
5LZU|1|5|U|3772
5LZU|1|5|U|3773
5LZU|1|5|A|3774
5LZU|1|5|A|3775
5LZU|1|5|G|3776
5LZU|1|5|G|3777
5LZU|1|5|U|3778
5LZU|1|5|A|3779
5LZU|1|5|G|3780
*
5LZU|1|5|U|3814
5LZU|1|5|G|3815
5LZU|1|5|A|3816
5LZU|1|5|A|3817
5LZU|1|5|U|3818
5LZU|1|5|G|3819

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 2
Transfer RNA; tRNA
Chain 9
Small subunit ribosomal RNA; SSU rRNA
Chain A
uL2
Chain n
60s ribosomal protein l41

Coloring options:


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