J4_5LZV_004

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

5LZV|1|5|C|216, 5LZV|1|5|C|217, 5LZV|1|5|A|218, 5LZV|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZV|1|5|C|196
5LZV|1|5|A|197
5LZV|1|5|A|198
5LZV|1|5|G|199
*
5LZV|1|5|C|215
5LZV|1|5|C|216
5LZV|1|5|C|217
5LZV|1|5|A|218
5LZV|1|5|G|219
5LZV|1|5|C|220
5LZV|1|5|C|221
5LZV|1|5|C|222
*
5LZV|1|5|G|226
5LZV|1|5|A|227
5LZV|1|5|C|228
*
5LZV|1|5|G|240
5LZV|1|5|G|241
5LZV|1|5|U|242
5LZV|1|5|A|243
5LZV|1|5|G|244

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain Y

uL24