J4_5LZW_004

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

5LZW|1|5|C|216, 5LZW|1|5|C|217, 5LZW|1|5|A|218, 5LZW|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZW|1|5|C|196
5LZW|1|5|A|197
5LZW|1|5|A|198
5LZW|1|5|G|199
*
5LZW|1|5|C|215
5LZW|1|5|C|216
5LZW|1|5|C|217
5LZW|1|5|A|218
5LZW|1|5|G|219
5LZW|1|5|C|220
5LZW|1|5|C|221
5LZW|1|5|C|222
*
5LZW|1|5|G|226
5LZW|1|5|A|227
5LZW|1|5|C|228
*
5LZW|1|5|G|240
5LZW|1|5|G|241
5LZW|1|5|U|242
5LZW|1|5|A|243
5LZW|1|5|G|244

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain Y

uL24