J4_5LZX_002
3D structure
- PDB id
- 5LZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- AUAG*CAU*AGGGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 5LZX|1|3|U|8, 5LZX|1|3|U|47, 5LZX|1|3|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5LZX_002 not in the Motif Atlas
- Homologous match to J4_5AXM_001
- Geometric discrepancy: 0.1767
- The information below is about J4_5AXM_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
5LZX|1|3|A|7
5LZX|1|3|U|8
5LZX|1|3|A|9
5LZX|1|3|G|10
*
5LZX|1|3|C|25
5LZX|1|3|A|26
5LZX|1|3|U|27
*
5LZX|1|3|A|43
5LZX|1|3|G|44
5LZX|1|3|G|45
5LZX|1|3|G|46
5LZX|1|3|U|47
5LZX|1|3|C|48
5LZX|1|3|C|49
*
5LZX|1|3|G|65
5LZX|1|3|U|66
Current chains
- Chain 3
- E-site tRNA
Nearby chains
- Chain FF
- uS7
- Chain o
- eL42
Coloring options: