J4_5MDW_002

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MDW_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0536

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5MDW|1|1|G|297
5MDW|1|1|G|298
5MDW|1|1|A|299
5MDW|1|1|A|300
5MDW|1|1|G|301
*
5MDW|1|1|C|316
5MDW|1|1|G|317
5MDW|1|1|C|318
5MDW|1|1|G|319
*
5MDW|1|1|C|323
5MDW|1|1|A|324
5MDW|1|1|G|325
*
5MDW|1|1|C|337
5MDW|1|1|G|338
5MDW|1|1|U|339
5MDW|1|1|A|340
5MDW|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24