J4_5MDY_003
3D structure
- PDB id
- 5MDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 5MDY|1|1|U|653, 5MDY|1|1|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5MDY_003 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.1783
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5MDY|1|1|C|601
5MDY|1|1|A|602
5MDY|1|1|A|603
5MDY|1|1|G|604
*
5MDY|1|1|C|624
5MDY|1|1|G|625
5MDY|1|1|A|626
5MDY|1|1|A|627
5MDY|1|1|G|628
*
5MDY|1|1|C|635
5MDY|1|1|G|636
5MDY|1|1|A|637
5MDY|1|1|G|638
*
5MDY|1|1|C|650
5MDY|1|1|G|651
5MDY|1|1|U|652
5MDY|1|1|U|653
5MDY|1|1|A|654
5MDY|1|1|A|655
5MDY|1|1|G|656
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain e
- 50S ribosomal protein L35
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