J4_5MDZ_005

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5MDZ|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MDZ_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0704

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5MDZ|1|1|G|1310
5MDZ|1|1|G|1311
5MDZ|1|1|U|1312
5MDZ|1|1|U|1313
5MDZ|1|1|C|1314
*
5MDZ|1|1|G|1338
5MDZ|1|1|G|1339
5MDZ|1|1|U|1340
5MDZ|1|1|G|1341
5MDZ|1|1|A|1342
5MDZ|1|1|G|1343
*
5MDZ|1|1|C|1404
5MDZ|1|1|U|1405
*
5MDZ|1|1|A|1597
5MDZ|1|1|A|1598
5MDZ|1|1|U|1599
5MDZ|1|1|C|1600
5MDZ|1|1|G|1601
5MDZ|1|1|U|1602
5MDZ|1|1|A|1603
5MDZ|1|1|C|1604

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34