J4_5MDZ_014
3D structure
- PDB id
- 5MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome (empty A site)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 5MDZ|1|2|C|576, 5MDZ|1|2|A|815, 5MDZ|1|2|C|817, 5MDZ|1|2|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5MDZ_014 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0577
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5MDZ|1|2|G|575
5MDZ|1|2|C|576
5MDZ|1|2|G|577
*
5MDZ|1|2|C|764
5MDZ|1|2|G|765
5MDZ|1|2|A|766
5MDZ|1|2|A|767
5MDZ|1|2|A|768
5MDZ|1|2|G|769
*
5MDZ|1|2|C|810
5MDZ|1|2|C|811
5MDZ|1|2|G|812
5MDZ|1|2|U|813
5MDZ|1|2|A|814
5MDZ|1|2|A|815
5MDZ|1|2|A|816
5MDZ|1|2|C|817
5MDZ|1|2|G|818
5MDZ|1|2|A|819
5MDZ|1|2|U|820
5MDZ|1|2|G|821
*
5MDZ|1|2|C|879
5MDZ|1|2|C|880
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain m
- 30S ribosomal protein S8
- Chain q
- 30S ribosomal protein S12
- Chain t
- 30S ribosomal protein S15
- Chain v
- 30S ribosomal protein S17
- Chain z
- 30S ribosomal protein S21
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