J4_5MGP_014
3D structure
- PDB id
- 5MGP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGG*CAC*GGGGUCG*UA
- Length
- 16 nucleotides
- Bulged bases
- 5MGP|1|x|U|8, 5MGP|1|x|U|47, 5MGP|1|x|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5MGP_014 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.2098
- The information below is about J4_9DFC_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
5MGP|1|x|U|7
5MGP|1|x|U|8
5MGP|1|x|G|9
5MGP|1|x|G|10
*
5MGP|1|x|C|25
5MGP|1|x|A|26
5MGP|1|x|C|27
*
5MGP|1|x|G|43
5MGP|1|x|G|44
5MGP|1|x|G|45
5MGP|1|x|G|46
5MGP|1|x|U|47
5MGP|1|x|C|48
5MGP|1|x|G|49
*
5MGP|1|x|U|65
5MGP|1|x|A|66
Current chains
- Chain x
- P-site tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
- Chain z
- Peptide chain release factor 2
Coloring options: