J4_5MLC_008

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

5MLC|1|A|A|1985

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MLC_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0967

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

5MLC|1|A|C|1843
5MLC|1|A|U|1844
5MLC|1|A|G|1845
*
5MLC|1|A|C|1919
5MLC|1|A|G|1920
*
5MLC|1|A|C|1938
5MLC|1|A|C|1939
5MLC|1|A|U|1940
5MLC|1|A|A|1941
5MLC|1|A|A|1942
5MLC|1|A|G|1943
5MLC|1|A|G|1944
5MLC|1|A|U|1945
5MLC|1|A|A|1946
5MLC|1|A|G|1947
*
5MLC|1|A|C|1981
5MLC|1|A|G|1982
5MLC|1|A|A|1983
5MLC|1|A|A|1984
5MLC|1|A|A|1985
5MLC|1|A|G|1986

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain D

50S ribosomal protein L2, chloroplastic