J4_5MRC_010
3D structure
- PDB id
- 5MRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial ribosome - Class A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.25 Å
Loop
- Sequence
- GGA*UUAAAA*UAGUAAACUAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 5MRC|1|aa|A|880, 5MRC|1|aa|C|882, 5MRC|1|aa|U|883, 5MRC|1|aa|A|884, 5MRC|1|aa|U|885
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5MRC_010 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.1054
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5MRC|1|aa|G|684
5MRC|1|aa|G|685
5MRC|1|aa|A|686
*
5MRC|1|aa|U|829
5MRC|1|aa|U|830
5MRC|1|aa|A|831
5MRC|1|aa|A|832
5MRC|1|aa|A|833
5MRC|1|aa|A|834
*
5MRC|1|aa|U|875
5MRC|1|aa|A|876
5MRC|1|aa|G|877
5MRC|1|aa|U|878
5MRC|1|aa|A|879
5MRC|1|aa|A|880
5MRC|1|aa|A|881
5MRC|1|aa|C|882
5MRC|1|aa|U|883
5MRC|1|aa|A|884
5MRC|1|aa|U|885
5MRC|1|aa|G|886
*
5MRC|1|aa|C|944
5MRC|1|aa|C|945
Current chains
- Chain aa
- 15S ribosomal RNA
Nearby chains
- Chain 11
- mS38
- Chain HH
- uS8m
- Chain LL
- uS12m
- Chain OO
- uS15m
- Chain QQ
- uS17m
- Chain TT
- bS21m
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