J4_5MRE_003
3D structure
- PDB id
- 5MRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial ribosome - Class B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CGAAAA*UC*GAAU*AG
- Length
- 14 nucleotides
- Bulged bases
- 5MRE|1|A|G|1304, 5MRE|1|A|A|1305, 5MRE|1|A|A|1599
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5MRE_003 not in the Motif Atlas
- Homologous match to J4_4WF9_004
- Geometric discrepancy: 0.4684
- The information below is about J4_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5MRE|1|A|C|1303
5MRE|1|A|G|1304
5MRE|1|A|A|1305
5MRE|1|A|A|1306
5MRE|1|A|A|1307
5MRE|1|A|A|1308
*
5MRE|1|A|U|1325
5MRE|1|A|C|1326
*
5MRE|1|A|G|1597
5MRE|1|A|A|1598
5MRE|1|A|A|1599
5MRE|1|A|U|1600
*
5MRE|1|A|A|1909
5MRE|1|A|G|1910
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain 3
- mL41
- Chain L
- bL17m
- Chain O
- uL22m
- Chain W
- bL32m
- Chain d
- mL67
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