J4_5MRE_006

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CUG*CA*UAUAAUGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

5MRE|1|A|U|1871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MRE_006 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.123

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

5MRE|1|A|C|1741
5MRE|1|A|U|1742
5MRE|1|A|G|1743
*
5MRE|1|A|C|1806
5MRE|1|A|A|1807
*
5MRE|1|A|U|1824
5MRE|1|A|A|1825
5MRE|1|A|U|1826
5MRE|1|A|A|1827
5MRE|1|A|A|1828
5MRE|1|A|U|1829
5MRE|1|A|G|1830
5MRE|1|A|U|1831
5MRE|1|A|A|1832
5MRE|1|A|G|1833
*
5MRE|1|A|U|1867
5MRE|1|A|G|1868
5MRE|1|A|A|1869
5MRE|1|A|A|1870
5MRE|1|A|U|1871
5MRE|1|A|G|1872

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 11

mS38

Chain B

uL2m

Chain aa

Small subunit ribosomal RNA; SSU rRNA