J4_5MRE_010

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGA*UUAAAA*UAGUAAACUAUG*CC

Length

23 nucleotides

Bulged bases

5MRE|1|aa|A|880, 5MRE|1|aa|C|882, 5MRE|1|aa|U|883, 5MRE|1|aa|A|884, 5MRE|1|aa|U|885

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MRE_010 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.1054

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

5MRE|1|aa|G|684
5MRE|1|aa|G|685
5MRE|1|aa|A|686
*
5MRE|1|aa|U|829
5MRE|1|aa|U|830
5MRE|1|aa|A|831
5MRE|1|aa|A|832
5MRE|1|aa|A|833
5MRE|1|aa|A|834
*
5MRE|1|aa|U|875
5MRE|1|aa|A|876
5MRE|1|aa|G|877
5MRE|1|aa|U|878
5MRE|1|aa|A|879
5MRE|1|aa|A|880
5MRE|1|aa|A|881
5MRE|1|aa|C|882
5MRE|1|aa|U|883
5MRE|1|aa|A|884
5MRE|1|aa|U|885
5MRE|1|aa|G|886
*
5MRE|1|aa|C|944
5MRE|1|aa|C|945

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 11

mS38

Chain HH

uS8m

Chain LL

uS12m

Chain OO

uS15m

Chain QQ

uS17m

Chain TT

bS21m