J4_5NCO_002

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NCO_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0758

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5NCO|1|A|G|297
5NCO|1|A|G|298
5NCO|1|A|A|299
5NCO|1|A|A|300
5NCO|1|A|G|301
*
5NCO|1|A|C|316
5NCO|1|A|G|317
5NCO|1|A|C|318
5NCO|1|A|G|319
*
5NCO|1|A|C|323
5NCO|1|A|A|324
5NCO|1|A|G|325
*
5NCO|1|A|C|337
5NCO|1|A|G|338
5NCO|1|A|U|339
5NCO|1|A|A|340
5NCO|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24