J4_5NCO_005

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5NCO|1|A|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NCO_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0685

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5NCO|1|A|G|1310
5NCO|1|A|G|1311
5NCO|1|A|U|1312
5NCO|1|A|U|1313
5NCO|1|A|C|1314
*
5NCO|1|A|G|1338
5NCO|1|A|G|1339
5NCO|1|A|U|1340
5NCO|1|A|G|1341
5NCO|1|A|A|1342
5NCO|1|A|G|1343
*
5NCO|1|A|C|1404
5NCO|1|A|U|1405
*
5NCO|1|A|A|1597
5NCO|1|A|A|1598
5NCO|1|A|U|1599
5NCO|1|A|C|1600
5NCO|1|A|G|1601
5NCO|1|A|U|1602
5NCO|1|A|A|1603
5NCO|1|A|C|1604

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain d

50S ribosomal protein L34

Chain i

Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein