J4_5NCO_009

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5NCO|1|A|U|1971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NCO_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1049

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

5NCO|1|A|C|1833
5NCO|1|A|U|1834
5NCO|1|A|G|1835
*
5NCO|1|A|C|1905
5NCO|1|A|G|1906
*
5NCO|1|A|C|1924
5NCO|1|A|C|1925
5NCO|1|A|U|1926
5NCO|1|A|A|1927
5NCO|1|A|A|1928
5NCO|1|A|G|1929
5NCO|1|A|G|1930
5NCO|1|A|U|1931
5NCO|1|A|A|1932
5NCO|1|A|G|1933
*
5NCO|1|A|C|1967
5NCO|1|A|G|1968
5NCO|1|A|A|1969
5NCO|1|A|A|1970
5NCO|1|A|U|1971
5NCO|1|A|G|1972

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2