J4_5ND8_002

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ND8_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.1161

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5ND8|1|A|C|340
5ND8|1|A|G|341
5ND8|1|A|A|342
5ND8|1|A|A|343
5ND8|1|A|U|344
*
5ND8|1|A|A|359
5ND8|1|A|A|360
5ND8|1|A|U|361
5ND8|1|A|C|362
*
5ND8|1|A|G|366
5ND8|1|A|A|367
5ND8|1|A|A|368
*
5ND8|1|A|U|380
5ND8|1|A|G|381
5ND8|1|A|U|382
5ND8|1|A|A|383
5ND8|1|A|G|384

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain X

50S ribosomal protein L24