J4_5ND8_004
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAAAG*CC*GAGC*GG
- Length
- 14 nucleotides
- Bulged bases
- 5ND8|1|A|G|1309, 5ND8|1|A|A|1310, 5ND8|1|A|A|1312, 5ND8|1|A|G|1691
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5ND8_004 not in the Motif Atlas
- Homologous match to J4_4WF9_004
- Geometric discrepancy: 0.1627
- The information below is about J4_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5ND8|1|A|C|1308
5ND8|1|A|G|1309
5ND8|1|A|A|1310
5ND8|1|A|A|1311
5ND8|1|A|A|1312
5ND8|1|A|G|1313
*
5ND8|1|A|C|1331
5ND8|1|A|C|1332
*
5ND8|1|A|G|1689
5ND8|1|A|A|1690
5ND8|1|A|G|1691
5ND8|1|A|C|1692
*
5ND8|1|A|G|2036
5ND8|1|A|G|2037
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain Q
- 50S ribosomal protein L17
- Chain V
- 50S ribosomal protein L22
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