J4_5ND8_010

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ND8_010 not in the Motif Atlas

Homologous match to J4_4WF9_009

Geometric discrepancy: 0.1422

The information below is about J4_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5ND8|1|A|G|2670
5ND8|1|A|A|2671
5ND8|1|A|G|2672
5ND8|1|A|C|2673
*
5ND8|1|A|G|2701
5ND8|1|A|A|2702
5ND8|1|A|C|2703
*
5ND8|1|A|G|2758
5ND8|1|A|G|2759
5ND8|1|A|A|2760
5ND8|1|A|C|2761
5ND8|1|A|G|2762
*
5ND8|1|A|C|2796
5ND8|1|A|C|2797
5ND8|1|A|C|2798

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain M

50S ribosomal protein L13

Chain N

50S ribosomal protein L14