J4_5ND8_011

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGUAACAC*GCU*AUAG*CC

Length

18 nucleotides

Bulged bases

5ND8|1|a|C|120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND8|1|a|G|114
5ND8|1|a|A|115
5ND8|1|a|G|116
5ND8|1|a|U|117
5ND8|1|a|A|118
5ND8|1|a|A|119
5ND8|1|a|C|120
5ND8|1|a|A|121
5ND8|1|a|C|122
*
5ND8|1|a|G|246
5ND8|1|a|C|247
5ND8|1|a|U|248
*
5ND8|1|a|A|294
5ND8|1|a|U|295
5ND8|1|a|A|296
5ND8|1|a|G|297
*
5ND8|1|a|C|319
5ND8|1|a|C|320

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17