J4_5ND8_012

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAC*GAUAAUAU*AGUGAAAG*CAC

Length

22 nucleotides

Bulged bases

5ND8|1|a|U|183, 5ND8|1|a|A|211, 5ND8|1|a|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ND8|1|a|G|142
5ND8|1|a|A|143
5ND8|1|a|C|144
*
5ND8|1|a|G|178
5ND8|1|a|A|179
5ND8|1|a|U|180
5ND8|1|a|A|181
5ND8|1|a|A|182
5ND8|1|a|U|183
5ND8|1|a|A|184
5ND8|1|a|U|185
*
5ND8|1|a|A|206
5ND8|1|a|G|207
5ND8|1|a|U|208
5ND8|1|a|G|209
5ND8|1|a|A|210
5ND8|1|a|A|211
5ND8|1|a|A|212
5ND8|1|a|G|213
*
5ND8|1|a|C|227
5ND8|1|a|A|228
5ND8|1|a|C|229

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20