J4_5ND9_002

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ND9_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1319

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

5ND9|1|A|C|340
5ND9|1|A|G|341
5ND9|1|A|A|342
5ND9|1|A|A|343
5ND9|1|A|U|344
*
5ND9|1|A|A|359
5ND9|1|A|A|360
5ND9|1|A|U|361
5ND9|1|A|C|362
*
5ND9|1|A|G|366
5ND9|1|A|A|367
5ND9|1|A|A|368
*
5ND9|1|A|U|380
5ND9|1|A|G|381
5ND9|1|A|U|382
5ND9|1|A|A|383
5ND9|1|A|G|384

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain X

50S ribosomal protein L24