J4_5ND9_008

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

5ND9|1|A|A|1998

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ND9_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.2264

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

5ND9|1|A|C|1860
5ND9|1|A|U|1861
5ND9|1|A|G|1862
*
5ND9|1|A|C|1932
5ND9|1|A|G|1933
*
5ND9|1|A|C|1951
5ND9|1|A|C|1952
5ND9|1|A|U|1953
5ND9|1|A|A|1954
5ND9|1|A|A|1955
5ND9|1|A|G|1956
5ND9|1|A|G|1957
5ND9|1|A|U|1958
5ND9|1|A|A|1959
5ND9|1|A|G|1960
*
5ND9|1|A|C|1994
5ND9|1|A|G|1995
5ND9|1|A|A|1996
5ND9|1|A|A|1997
5ND9|1|A|A|1998
5ND9|1|A|G|1999

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA