J4_5NDG_010

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UAA*UC*GCUG*CAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDG|1|1|U|3010
5NDG|1|1|A|3011
5NDG|1|1|A|3012
*
5NDG|1|1|U|3042
5NDG|1|1|C|3043
*
5NDG|1|1|G|3098
5NDG|1|1|C|3099
5NDG|1|1|U|3100
5NDG|1|1|G|3101
*
5NDG|1|1|C|3133
5NDG|1|1|A|3134
5NDG|1|1|U|3135
5NDG|1|1|G|3136

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain M6

60S ribosomal protein L16-A

Chain N3

60S ribosomal protein L23-A