J4_5NDG_028
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UAA*UC*GCU*AUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NDG_028 not in the Motif Atlas
- Homologous match to J4_8CRE_009
- Geometric discrepancy: 0.1024
- The information below is about J4_8CRE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_65356.1
- Basepair signature
- cWW-tSS-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NDG|1|1|U|3010
5NDG|1|1|A|3011
5NDG|1|1|A|3012
*
5NDG|1|1|U|3042
5NDG|1|1|C|3043
*
5NDG|1|1|G|3098
5NDG|1|1|C|3099
5NDG|1|1|U|3100
*
5NDG|1|1|A|3134
5NDG|1|1|U|3135
5NDG|1|1|G|3136
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L3
- 60S ribosomal protein L3
- Chain M6
- 60S ribosomal protein L16-A
- Chain N3
- 60S ribosomal protein L23-A
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