J4_5NDW_007
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 5NDW|1|1|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NDW_007 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.081
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDW|1|1|C|2192
5NDW|1|1|U|2193
5NDW|1|1|G|2194
*
5NDW|1|1|C|2248
5NDW|1|1|G|2249
*
5NDW|1|1|C|2267
5NDW|1|1|U|2268
5NDW|1|1|U|2269
5NDW|1|1|A|2270
5NDW|1|1|A|2271
5NDW|1|1|G|2272
5NDW|1|1|G|2273
5NDW|1|1|U|2274
5NDW|1|1|A|2275
5NDW|1|1|G|2276
*
5NDW|1|1|U|2310
5NDW|1|1|G|2311
5NDW|1|1|A|2312
5NDW|1|1|A|2313
5NDW|1|1|U|2314
5NDW|1|1|G|2315
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain L2
- 60S ribosomal protein L2-A
- Chain Q1
- 60S ribosomal protein L41-A
Coloring options: